Tim Clark

Tim Clark MSc

Director, Center for Interdisciplinary Informatics at MIND

Center for Interdisciplinary Informatics at MIND

Recent Publications

Clark T (2003) ‘Identity and Interoperability in Bioinformatics’. Briefings in Bioinformatics 4(1), pp 4-6.

Ficenec D, Osborne M, Pradines J, Richards D, Felciano R, Cho R, Chen R, Liefeld T, Owen JJ, Ruttenberg A, Reich C, Horvath J, and Clark T (2003) ‘Computational Knowledge Integration in Biopharmaceutical Research’. Briefings in Bioinformatics 4(3), pp 260-278.

Clark T, Martin S, Liefeld T (2004) ‘Globally Distributed Object Identification for Biological Knowledge Bases’. Briefings in Bioinformatics 5(1) pp 59-70.

Gao Y, Kinoshita J, Wu E, Miller E, Lee R, Seaborne A, Cayzer S, Clark T (2006) ‘SWAN: A Distributed Knowledge Infrastructure for Alzheimer Disease Research’. Journal of Web Semantics 4(3).

Cheung KH, Lam YK, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong G, Liu N, Crasto C, Morse T, Stephen S (2006) ‘AlzPharm: A Light-Weight RDF Warehouse for Integrating Neurodegenerative Data’. ISWC 2006, Athens, Georgia.

Lam YK, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong G, Liu N, Crasto C, Morse T, Stephens S, Cheung KH. (2006) ‘Semantic Web Meets e-Neuroscience: An RDF Use Case’. Proceedings of International Workshop on Semantic e-Science, ASWC 2006. Beijing, China: Jilin University Press, pp 158-170.

Cantuti-Castelvetri I, Keller-McGandy C; Bouzou B, Asteris G, Clark T, Frosch MP, Standaert DG (2007) ‘Effects of Gender on Nigral Gene Expression and Parkinson Disease’. Neurobiology of Disease, 2007 Jun;26(3):606-14.

Cheung KH, Lam YK, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong G, Liu N, Crasto C, Morse T, Stephen S (2006) ‘AlzPharm: integration of neurodegeneration data using RDF’. BMC Bioinformatics 2007, 8(Suppl 3):S4 doi:10.1186/1471-2105-8-S3-S4.

Ciccarese P, Wu E, Clark T (2007) ‘An Overview of the SWAN 1.0 Ontology of Scientific Discourse’. 16th International World Wide Web Conference (WWW2007). 2007. Banff, Canada. May 8-12, 2007.

Clark T (2007) ‘Knowledge Integration: Technology and Community’. Briefings in Bioinformatics 8(3).

Clark T and Kinoshita J (2007) Alzforum and SWAN: The Present and Future of Scientific Web Communities. Briefings in Bioinformatics 8(3).

Lam YK, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong G, Liu N, Crasto C, Morse T, Stephens S, Cheung KH (2007) ‘Semantic Web Meets e-Neuroscience’, BMC BioInformatics 8 Suppl 3 S2.

Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, Doherty D, Forsberg K, Gao Y, Kashyap V, Kinoshita J, Luciano J, Marshall MS, Ogbuji C, Rees J, Stephens S, Wong GT, Wu E, Zaccagnini D, Hongsermeier T, Neumann E, Herman I, Cheung KH (2007) Advancing translational research with the Semantic Web. BMC Bioinformatics 8 Suppl 3 S2.

Sadri-Vakili G, Bouzou B, Benn CL, Cattaneo E, Kim MO, Chawla P, Overland RP, Glajch KE, Xia E, Qiu Z, Hersch SM, Clark T, MacDonald ME, Yohrling GJ, Cha JH (2007) Histones Associated with Downregulated Genes are Hypo-acetylated in Huntington’s Disease Models. Human Molecular Genetics Jun 1;16(11):1293-306.