Publications
The World-Wide Web. In: Dubitzky W, Wolkenhauer O, Cho K-H, Yokota H (Eds.), Encyclopedia of Systems Biology. Heidelberg, DE: Springer; 2013
. Micropublications: a Semantic Model for Claims, Evidence, Arguments and Annotations in Biomedical Communications [Internet]. Journal of Biomedical Semantics Submitted;Available from: http://arxiv.org/abs/1305.3506
. A Round-Trip to the Annotation Store: Open, Transferable Semantic Annotation of Biomedical Publications. In: Beyond the PDF, San Diego, 19-21 Jan 2011. 2011
. Globally Distributed Object Identification for Biological Knowledgebases. Brief Bioinform 2004;5(1):59-70.
. Alzforum and SWAN: The Present and Future of Scientific Web Communities. Brief Bioinform 2007;8(3):163-71.
. Knowledge Integration in Biomedicine: Technology and Community. Brief Bioinform 2007;
. Collaborative and distributed biomedical applications. In: Dubitzky W, Wolkenhauer O, Cho K-H, Yokota H (Eds.), Encyclopedia of Systems Biology. Heidelberg, DE: Springer; 2013
. Web Annotation as a First Class Object. IEEE Internet Computing In Press;
. The SWAN Biomedical Discourse Ontology. J Biomed Inform 2008;41(5):739-51.
. AO: An Open Annotation Ontology for Science on the Web. In: Bio-Ontologies 2010, July 9-10 2010, Boston MA. 2010
. An Open Annotation Ontology for Science on Web 3.0. J Biomed Semantics 2011;2 Suppl 2:S4.
. The Collections Ontology: creating and handling collections in OWL 2 DL frameworks [Internet]. Semantic Web Journal In Press;Available from: http://www.semantic-web-journal.net/system/files/swj506.pdf
. An Overview of the SWAN 1.0 Discourse Ontology [Internet]. In: Workshop on Health Care and Life Sciences Data Integration for the Semantic Web, WWW2007. 16th International World Wide Web Conference. Banff, Canada: 2007Available from: http://www2007.org/workshops/paper_145.pdf
. CiTO + SWAN: The Web Semantics of Bibliographic Records, Citations, Evidence and Discourse Relationships. [Internet]. Semantic Web Journal 2012;Available from: http://www.semantic-web-journal.net/system/files/swj175_1.pdf
. DOMEO: a web-based tool for semantic annotation of online documents. In: Bio-Ontologies 2011, July 15-16, Vienna Austria. 2011
. Open semantic annotation of scientific publications using DOMEO. J Biomed Semantics 2012;3 Suppl 1:S1.
. Improving data and knowledge management to better integrate health care and research. J Intern Med 2013;274(4):321-8.
. Web Semantics in Action: Web 3.0 in e-Science. In: 5th IEEE International Conference on e-Science. Oxford, UK: 2009
. Effects of Gender on Nigral Gene Expression and Parkinson Disease. Neurobiol Dis 2007;26(3):606-14.
. The Future of Research Communication and e-Scholarship. Dagstuhl reports 2011;1(8)
. Improving Future Research Communication and e-Scholarship: A Summary of Findings. Informatik-Spektrum 2012;35(1):56-57.
. A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. Database (Oxford) 2012;2012:bas005.
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