MassGeneral Institute for Neurodegenerative Disease

Translating today's discoveries into tomorrow's cures

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Publications

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[ Author(Asc)] Title Type Year
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Passant A, Ciccarese P, Breslin JG, Clark T. SWAN/SIOC: Aligning Scientific Discourse Representation and Social Semantics [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009). Washington DC: 2009Available from: http://www.johnbreslin.org/files/publications/20091026_swas2009.pdf
Passant A, Ciccarese P, Breslin J, Clark T. SWAN/SIOC: Aligning Scientific Discourse Representation and Social Semantics [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009), Oct 25-29 2009, Washington DC. 2009Available from: http://www.johnbreslin.org/files/publications/20091026_swas2009.pdf
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Luciano JS, Andersson D, Batchelor C, Bodenreider O, Clark T, Denney C, Domarew C, Gambet T, Jentzsch A, Kashyap V, Kos P, Kozlovsky J, Marshall MS, McCusker JP, McGuinness DL, Lebo T, Ogbuji C, Pichler E, Powers RL, Prud’hommeaux E, Samwald M, Schriml L, Tonellato PJ, Whetzelm PL, Zhao J, Stephens S, Dumontier M. The Translational Medicine Ontology and Knowledge Base: Using Semantic Web Technology in Personalized Medicine for Data Integration. In: AMIA Summit on Translational Bioinformatics, March 7-9, 2011, San Francisco CA, USA. 2011
Luciano JS, Andersson B, Batchelor C, Bodenreider O, Clark T, Denney CK, Domarew C, Gambet T, Harland L, Jentzsch A, Kashyap V, Kos P, Kozlovsky J, Lebo T, Marshall SM, McCusker JP, McGuinness DL, Ogbuji C, Pichler E, Powers RL, Prud'hommeaux E, Samwald M, Schriml L, Tonellato PJ, Whetzel PL, Zhao J, Stephens S, Dumontier M. The Translational Medicine Ontology and Knowledge Base: Driving personalized medicine by bridging the gap between bench and bedside. J Biomed Semantics 2011;2 Suppl 2:S1.
Lam HYK, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung K-H. AlzPharm: integration of neurodegeneration data using RDF. BMC Bioinformatics 2007;8 Suppl 3:S4.
Lam HYK, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung K-H. Semantic Web Meets e-Neuroscience: An RDF Use Case. Semantic Web - ASWC 2006: First Asian Semantic Web Conference 2006;:158-170.
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Kinoshita J, Clark T. Alzforum. Methods Mol Biol 2007;401:365-81.
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Groza T, Handschuh S, Clark T, Shum SB. A Short Survey of Scientific Discourse Representation Models [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009), Oct 25-29 2009, Washington DC. 2009Available from: http://www.w3.org/wiki/images/c/c8/HCLS$$ISWC2009$$Workshop$Groza.pdf
Groza T, Handschuh S, Clark T, Shum SBuckingham, de Waard A. A Short Survey of Scientific Discourse Representation Models [Internet]. In: Workshop on Semantic Web Applications in Scientific Discourse, 8th International Conference on Semantic Web (ISWC 2009). Washington DC: 2009Available from: http://www.w3.org/wiki/images/c/c8/HCLS$$ISWC2009$$Workshop$Groza.pdf
Gao Y, Kinoshita J, Wu E, Miller E, Lee R, Seaborne A, Cayzer S, Clark T. SWAN: A Distributed Knowledge Infrastructure for Alzheimer Disease Research. Journal of Web Semantics 2006;4(3):222-228.
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Dumontier M, Anderson B, Batchelor C, Domarew C, Jentsch A, Luciano J, Pichler E, Prud’hommeaux E, Whetzel P, Bodenreider O, Clark T, Harland L, Kashyap V, Kos P, Kozlovsky J, McGurk J, Ogbuji C, Samwald M, Schriml L, Tonatello P, Zhao J, Stephens S. Translational Medicine Ontology: Driving personalized medicine by bridging the gap from bedside to bench. In: Bio-Ontologies 2010, July 9-10 2010, Boston MA. 2010
Das S, Girard L, Green T, Weitzman L, Lewis-Bowen A, Clark T. Building Biomedical Web Communities Using a Semantically Aware Content Management System. Brief Bioinform 2009;10(2):129-38.
Das S, Goetz M, Girard L, Clark T. Scientific Publications on Web 3.0 [Internet]. In: 13th International Conference on Electronic Publishing (ELPUB 2009). Milan, Italy: 2009Available from: http://elpub.scix.net/cgi-bin/works/Show?149_elpub2009
Das S, Rogan M, Kawadler H, Corlosquet S, Brin S, Clark T. PD Online: a case study in scientific collaboration on the Web. In: Workshop on the Future of the Web for Collaborative Science, 19th International World Wide Web Conference, Raleigh, North Carolina USA - April 26-30, 2010. 2010
Das S, Green T, Weitzman L, Lewis-Bowen A. Linked data in a scientific collaboration framework [Internet]. In: Workshop on Health Care and Life Sciences Data Integration for the Semantic Web, WWW2008. 17th International World Wide Web Conference. Beijing, China: 2008Available from: http://www.w3.org/wiki/images/f/f5/HCLSIG$$SWANSIOC$SCF_Paper_WWW08.pdf
Das S, Rogan M, Kawadler H, Corlosquet S, Brin S, Clark T. PD Online: a case study in scientific collaboration on the Web [Internet]. In: Workshop on the Future of the Web for Collaborative Science, 19th International World Wide Web Conference. Raleigh, North Carolina USA: 2010Available from: http://imageweb.zoo.ox.ac.uk/pub/2010/Proceedings/FWCS2010/02/Paper2.pdf

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